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Events

  • Feb
    24

    Zhihan Zhou Final Defense Monday, February 24th

    Department of Computer Science (CS)

    3:30 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    Deciphering the Language of DNA with Genome Foundation Models

    Abstract:

    Deciphering the language of the genome is a fundamental challenge with transformative implications across multiple critical domains. This thesis aims to advance genome analysis and synthesis through the introduction of genome foundation models (gFMs)—general-purpose genomic models designed to address a broad spectrum of genomics and metagenomics problems.

    We first demonstrate the promise of self-supervised DNA modeling with DNABERT, the first gFM that outperforms traditional methods in diverse prediction tasks. Building on these insights, we introduce DNABERT-2, incorporating compact sequence representations, modern computational techniques, and multi-species genomes to enhance the applicability, efficiency, and effectiveness of discriminative gFMs.

    Moving beyond analysis, we further explore generative modeling in genomics through GenomeOcean, a 4-billion-parameter generative gFM trained on massive metagenomic assemblies. GenomeOcean exhibits a profound understanding of protein functions and higher-order genomic functional modules by generating novel and realistic sequences under diverse prompts. Finally, we propose a generalizable framework for producing effective DNA embeddings tailored to biologically meaningful relationships.

    Together, this new class of models opens new avenues and provides a robust foundation for advancing genomics and metagenomics research.

    more less

    TIME Monday, February 24, 2025 at 3:30 PM - 5:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    16

    Theory Seminar: Jingwei Li, Columbia

    Department of Computer Science (CS)

    2:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Thursday, April 16, 2026 at 2:00 PM - 3:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Bob Guo    BobGuo2023@u.northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    17

    Tech Talk: CS Alumni Career Panel

    Department of Computer Science (CS)

    12:00 PM

    EVENT DETAILS

    TIME Friday, April 17, 2026 at 12:00 PM - 1:00 PM

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    CONTACT Bella Barrios    marbella.barrios@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    20

    Open Classroom Week

    Department of Computer Science (CS)

    All Day

    EVENT DETAILS

    TIME Monday, April 20, 2026

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    20

    CS Student Seminar: Access Is Not Enough: Toward Developmental Flourishing in Assistive Technology (Yuanyang Teng)

    Department of Computer Science (CS)

    12:00 PM

    EVENT DETAILS

    TIME Monday, April 20, 2026 at 12:00 PM - 1:00 PM

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    CONTACT Chang Wang    wc@u.northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    21

    Open Classroom Week

    Department of Computer Science (CS)

    All Day

    EVENT DETAILS

    TIME Tuesday, April 21, 2026

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    22

    Open Classroom Week

    Department of Computer Science (CS)

    All Day

    EVENT DETAILS

    TIME Wednesday, April 22, 2026

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    22

    CS Seminar: On the Hardness of Learning Regular Expressions (Lev Reyzin)

    Department of Computer Science (CS)

    12:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Wednesday, April 22, 2026 at 12:00 PM - 1:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    23

    Open Classroom Week

    Department of Computer Science (CS)

    All Day

    EVENT DETAILS

    TIME Thursday, April 23, 2026

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    23

    Sergio Servantez Final Defense April 23: Large Language Models as Legal Reasoners

    Department of Computer Science (CS)

    1:30 PM 3501, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Thursday, April 23, 2026 at 1:30 PM - 3:30 PM

    LOCATION 3501, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Jensen Smith    jensen.smith@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    24

    Open Classroom Week

    Department of Computer Science (CS)

    All Day

    EVENT DETAILS

    TIME Friday, April 24, 2026

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    27

    CS Seminar: Tushar Chandra

    Department of Computer Science (CS)

    12:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Monday, April 27, 2026 at 12:00 PM - 1:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    29

    CS Seminar: Have we seen a demonstration of experimental quantum advantage? (Bill Fefferman)

    Department of Computer Science (CS)

    12:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Wednesday, April 29, 2026 at 12:00 PM - 1:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • Apr
    30

    Bagel Thursday

    Department of Computer Science (CS)

    9:00 AM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Thursday, April 30, 2026 at 9:00 AM - 11:00 AM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    4

    CS Seminar: Moon Duchin

    Department of Computer Science (CS)

    12:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Monday, May 4, 2026 at 12:00 PM - 1:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    6

    CS Student Seminar

    Department of Computer Science (CS)

    12:00 PM

    EVENT DETAILS

    TIME Wednesday, May 6, 2026 at 12:00 PM - 1:00 PM

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    13

    CS Student Seminar

    Department of Computer Science (CS)

    12:00 PM

    EVENT DETAILS

    TIME Wednesday, May 13, 2026 at 12:00 PM - 1:00 PM

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    14

    CS Distinguished Lecture: Prabhakar Raghavan, Google

    Department of Computer Science (CS)

    4:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Thursday, May 14, 2026 at 4:00 PM - 5:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    18

    CS Student Seminar

    Department of Computer Science (CS)

    12:00 PM

    EVENT DETAILS

    TIME Monday, May 18, 2026 at 12:00 PM - 1:00 PM

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    20

    CS Distinguished Lecture: Julio Ottino

    Department of Computer Science (CS)

    12:00 PM 3514, Mudd Hall ( formerly Seeley G. Mudd Library)

    EVENT DETAILS

    TIME Wednesday, May 20, 2026 at 12:00 PM - 1:00 PM

    LOCATION 3514, Mudd Hall ( formerly Seeley G. Mudd Library)    map it

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    CONTACT Wynante R Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)

  • May
    27

    End of Year Department Awards

    Department of Computer Science (CS)

    3:00 PM TGS Commons, 2122 Sheridan Road

    EVENT DETAILS

    TIME Wednesday, May 27, 2026 at 3:00 PM - 5:00 PM

    LOCATION TGS Commons, 2122 Sheridan Road    map it

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    CONTACT Wynante Charles    wynante.charles@northwestern.edu EMAIL

    CALENDAR Department of Computer Science (CS)