Faculty Directory
Neda Bagheri

Assistant Professor of Chemical and Biological Engineering

Contact

2145 Sheridan Road
Tech E154
Evanston, IL 60208-3109

847-491-2716Email Neda Bagheri

Website

Bagheri Lab


Centers

Center for Synthetic Biology


Departments

Chemical and Biological Engineering

Education

Ph.D./M.S. Electrical & Computer Engineering, University of California, Santa Barbara

B.S. Electrical & Computer Engineering, University of California, Santa Barbara



Selected Publications

    Jessica S. Yu, Albert Y. Xue, Eva E. Redei and Neda Bagheri (2016). A support vector machine model provides an accurate transcript-­level-­based diagnostic for major depressive disorder. Transl Psychiatry;; DOI:10.1038/tp.2016.198

    Jessica S. Yu and Neda Bagheri (2016). Multi-­class and multi-­scale models of complex biological  phenomena. Curr. Opin. Biotechnol.;; DOI: 10.1016/j.copbio.2016.04.002.

    Steven M. Hill, et al. and HPN-­DREAM Consortium§ (2016). Inferring causal molecular networks: empiricalassessment through a community-­based effort. Nat. Methods;; DOI:10.1038/nmeth.3773. §Part of the consortium

    Mark F. Ciaccio, Vincent C. Chen, Richard B. Jones, and Neda Bagheri (2015). The DIONESUS algorithm provides scalable and accurate reconstruction of signaling networks to reveal new drug targets. Integr. Biol.;;10.1039/C5IB00065C. Cover art—featured on the front cover of July 2015 issue

    Mark F. Ciaccio, Justin D. Finkle, Albert Y. Xue, and Neda Bagheri (2014). A systems approach to integrative biology: An overview of statistical methods to elucidate association and architecture. Integr. And Comp. Biol.;; icu037.

    Mark Duncan, Seungjin Shin, Jia Wu, Zachary Mays, Stanley Weng, Neda Bagheri, William M. Miller, Lonnie D. Shea (2014). Dynamic transcription factor activity profiles reveal key regulatory interactions during megakaryocytic and erythroid differentiation. Biotech. and Bioeng.. DOI: 10.1002/bit.25262

    Qing Han*, Neda Bagheri*, Elizabeth M. Bradshaw, David A. Hafler, Douglas A. Lauffenburger, J. Christopher Love (2012). Polyfunctional responses by human T cells result from sequential release of cytokines. Proc. Natl. Acad. Sci. U. S. A. 109(5):1607-­12. DOI: 10.1073/pnas.1117194109

    Neda Bagheri, Marisa Shiina, Douglas A. Lauffenburger, W. Michael Korn (2011). A Dynamical Systems Model for Combinatorial Cancer Therapy Enhances Oncolytic Adenovirus Efficacy by MEK-­inhibition. PLoS Comput Biol 7(2): e1001085. DOI: 10.1371/journal.pcbi.1001085.

    Neda Bagheri, Michael J. Lawson, Jörg Stelling, and Francis J. Doyle III (2008). Modeling the Drosophila melanogaster Circadian Oscillator via Phase Optimization. Journal of Biological Rhythms 23(6): 525-­537. DOI: 10.1177/0748730408325041.

    Neda Bagheri, Jörg Stelling, and Francis J. Doyle III (2008). Circadian phase resetting via Single & Multiple Control Targets. PLoS Comput Biol 4(7): e1000104. DOI: 10.1371/journal.pcbi.1000104.

    Neda Bagheri, Stephanie R. Taylor, Kirsten Meeker, Linda R. Petzold, and Francis J. Doyle III (2008). Synchrony and Entrainment Properties of Robust Circadian Oscillators. R. Soc. Interface 5: S17–S28. DOI: 10.1098/rsif.2008.0045.focus.

    Neda Bagheri, Jörg Stelling, and Francis J. Doyle III (2007). Quantitative performance metrics for robustness in circadian rhythms. Bioinformatics 23(3): 358-­364. DOI: 10.1093/bioinformatics/btl627.

    Neda Bagheri, Jörg Stelling, and Francis J. Doyle III (2007). Quantitative performance metrics for robustness in circadian rhythms. Bioinformatics 23(3): 358-­364. DOI: 10.1093/bioinformatics/btl627.

    Francis J. Doyle III, Rudiyanto Gunawan, Neda Bagheri, Henry Mirsky, and Tsz Leung To (2006). Circadian rhythm: A natural, robust, multi-­scale control system. Computers & Chemical Engineering 30: 1700-­1711. DOI:10.1016/j.compchemeng.2006.05.029.